Welcome
Being both a natural products chemist and a computer programmer I was
looking for a unique yet useful subject on which to design a web site
(my first) that combined both my interests. Googling one day I was struck
by the total absence of sample ACD/Structure Elucidator ".gnr"
files. Thus 2DNMR.com a personal web site devoted to the "Elucidator"
was born on the 1st of October 2005.
I hope you find the site interesting and excuse my informal practical
style to the subject.
Dr Shaun Tennant
Introduction
I have been using the Elucidator since version 5 (circa 2002) for natural
product structure elucidation. Having declined ACD’s offer of
training (maybe that was not a good idea) I found that the Elucidator
has a steep, but preventable, learning curve. My intention with this
web site is to convey my experience with the Elucidator to help users
avoid unnecessary frustration. There are really only a very small number
of tips & tricks or strategies
to learn that will get you quickly solving structures with the Elucidator.
Although there are three structure generators in the Elucidator I will
only discuss the Correlation Spectroscopy Based Generator that uses
2D NMR data. Also, the NMR processor and Structure Elucidator are separate
programs but the Elucidator is so dependant on the processor I will
not distinguish between the two.
Brief Philosophy
(skip if you like)
2D NMR based structure elucidation has traditionally been performed
manually by chemists. The strength of a skilled chemist is in the rapid
identification of familiar substructures and elimination unlikely structural
elements. The downside to this is that other possible solutions may
not be considered (human bias). Furthermore, as an elucidation problem
becomes less constrained the number of possible solutions increases
exponentially and can exceed even the most experienced chemist. Computer
assisted structure elucidation address these issues by removing bias,
considering all solutions, speeding up the elucidation process and reducing
the knowledge base required. In many ways 2D NMR structure elucidation
is evolving analogously to crystallography that was once also a skiled
and labour intensive method.
Acknowledgements
I would like to thank Microbial
Screening Technologies Pty Ltd for giving kind permission to release
sample GNR files and Advanced Chemistry
Development Inc for involving me in their beta testing program.
Disclaimer
The views and opinions expressed on this site are my own and do not
represent that of either my employer, Microbial Screening Technologies
Pty Ltd, or those of Advanced Chemistry Development Inc. All errors,
prejudices and plain stupid ideas are mine - you have been warned.